QC-Blind

Target and contamination distribution and concentration in simulated sample Simu_BS_35%
Data loss at read assembly, contig binning and marker gene mapping of MEGAHIT-BLAST
Target and contamination distribution and concentration in simulated sample Simu_BS_5%
Purity of reads and contigs in all clusters in each sample (C contigs,R reads)

Features

Reference-free

filter out contamination sequences totally based on information inside sequencing data

High accuracy

Contigs or reads are highly concentrated in pure clusters which are easy to be found by marker genes

Multi-level QC

The pipeline outstand at complex situations on multi-species level with different degree of contaminations

High throughput

It's promising to analyse large scale resaerch exemplified as one relating to time series samples or replicates.

Contact Us

Huazhong University of Science & Technology

+86 027 87793041
ningkang@hust.edu.cn
Wuhan, Luoyu Road

Information

If you have any problems while using this pipeline, please contact us at once and provide some details about problems, we will fix them as soon as possible.

You can follow us on Github , most of our softwares are opensource!

A novel quality control pipeline